Cn3d manual

An alternate protocol builds upon the first basic protocol, using additional, built-in features of the Entrez system, and providing alternative ways to issue the initial query. The support protocol reviews how to save frequently issued queries. Finally, Cn3D, a structure visualization tool, is also discussed.  · Online Bioinformatics Tutorials. The NIH Library has secured licensing for a wide range of bioinformatics resources (available to only NIH staff). Below are links to online tutorials and other related training materials for these resources. Click the title of the resource to access the training materials. Additional links are available to. N.B. results come by E-mail and require a viewer such as DeepView - Swiss-PdbViewer, Rasmol, or Cn3D. ORION - is a web server for protein fold recognition and structure prediction using evolutionary hybrid profiles. Various databases such as PDB, SCOP and HOMSTRAD can be mined to find an appropriate structural template.

Cn3D is provided for Windows and Macintosh, and can be compiled on Unix. Cn3D simultaneously displays structure, sequence, and alignment, and now has powerful annotation and alignment editing features. Below is a relatively simple sample of what Cn3D can do. Cn3D. According to our registry, Cn3D is capable of opening the files listed below. It is possible that Cn3D can convert between the listed formats as well, the application’s manual can provide information about it. System requirements. The precise system requirements for the Cn3D application are included in the software’s manual. Cn3D Can Map a Sequence onto an Appropriate Model Structure. Cn3D can also be used to map a subject protein sequence onto a structural template if sufficient sequence similarity between the sequences of the template and subject. An example is given in Figure 4 below.

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